| Program |
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Monday: Machine learning applied to sequence analysis |
| |
| 9:00 |
- |
10:20 |
am |
Registration and morning tea |
| 10:20 |
- |
10:30 |
am |
Opening and welcome |
| 10:30 |
- |
12:00 |
pm |
Mark Borodovsky - Biological sequence analysis with machine |
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|
|
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learned Markov models |
| 12:00 |
- |
1:00 |
pm |
Lunch |
| 1:00 |
- |
2:00 |
pm |
Tim Bailey - Finding patterns in biological sequences |
| 2:00 |
- |
3:00 |
pm |
Paul Horton - The bioinformatics of protein subcellular localization |
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|
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|
prediction |
| 3:00 |
- |
3:30 |
pm |
Afternoon tea |
| 3:30 |
- |
4:30 |
pm |
Martin Frith - Identifying short proteins: a bioinformatics case study |
| 4:30 |
- |
5:15 |
pm |
Mark Borodovsky - Software demo: GeneMark and GeneMark.hmm |
| 5:30 |
- |
|
pm |
Welcome BBQ |
|
| |
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Tuesday: Morning - Combinatorial optimisation in bioinformatics |
| Afternoon - Software workshops |
| |
| 9:00 |
- |
10:30 |
am |
Regina Berretta - Combinatorial optimisation models for finding |
| |
|
|
|
genetic signatures from gene expression datasets |
| 10:30 |
- |
11:00 |
am |
Morning tea |
| 11:00 |
- |
12:00 |
pm |
Pablo Moscato - Towards robust classification methods for clinical |
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|
|
|
bioinformatics |
| 12:00 |
- |
1:00 |
pm |
Lunch |
| 1:00 |
- |
1:40 |
pm |
Tim Bailey - Motif discovery in biosequences |
| 1:40 |
- |
2:40 |
pm |
Paul Taylor - MATLAB for bioinformatics |
| 2:40 |
- |
3:20 |
pm |
James J. Cai - Molecular evolution and population genetics with |
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|
|
|
MATLAB - MBEToolbox and PGEToolbox |
| 3:20 |
- |
4:00 |
pm |
Afternoon tea |
| 4:00 |
- |
5:00 |
pm |
Public lecture: |
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Andrew Roger - What can genes and genomes tell us about the |
| |
|
|
|
"super-kingdoms" of Life? |
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Wednesday: Evolutionary genomics |
| |
| 9:00 |
- |
10:30 |
am |
Mike Hendy - Mathematical phylogenetics using Hadamard |
| |
|
|
|
conjugation |
| 10:30 |
- |
11:00 |
am |
Morning tea |
| 11:00 |
- |
12:30 |
pm |
Barbara Holland - Exploratory analysis of phylogenetic data |
| |
|
|
|
using splits-graphs |
| 12:30 |
- |
1:30 |
pm |
Lunch |
| 1:30 |
- |
2:30 |
pm |
Michael Charleston - Concatenating sequence data from multiple |
| |
|
|
|
genes |
| 2:30 |
- |
3:30 |
pm |
Charles Semple - Hybridisation networks |
| 3:30 |
- |
4:00 |
pm |
Afternoon tea |
| 4:00 |
- |
5:00 |
pm |
Alexei Drummond - Phylogenetic estimation of evolutionary rates |
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|
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and divergence dates |
|
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Thursday: Microarrays and analysis of microarray data |
| |
| 9:00 |
- |
10:00 |
am |
Sean Grimmond - Globally surveying the transcriptome |
| 10:00 |
- |
10:30 |
am |
Morning tea |
| 10:30 |
- |
11:45 |
am |
Terry Speed - Statistical aspects of SNP genotyping using microarrays |
| 11:45 |
- |
12:30 |
pm |
Liat Ben-Tovim Jones - Detecting differentially expressed genes |
| 12:30 |
- |
1:30 |
pm |
Lunch |
| 1:30 |
- |
2:15 |
pm |
Toni Reverter - Simultaneous identification of differential gene |
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|
|
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expression and connectivity in inflammation, adipogenesis and |
| |
|
|
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cancer |
| 2:15 |
- |
3:00 |
pm |
Kim-Anh Do - Merging microarray data, robust feature selection, |
| |
|
|
|
and predicting prognosis in prostate cancer |
| 3:00 |
- |
3:30 |
pm |
Afternoon tea |
| 3:30 |
- |
4:15 |
pm |
Geoff McLachlan - Classification of microarray data |
|
| |
|
Friday: The e-research paradigm / Grid |
| |
| 9:00 |
- |
10:10 |
am |
David Abramson - How do I make my software work on the Grid? |
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|
|
|
(without changing careers!) |
| 10:10 |
- |
10:40 |
am |
Morning tea |
| 10:40 |
- |
11:50 |
am |
Jane Hunter - The semantic grid: moving from data management to |
| |
|
|
|
knowledge management |
| 12:00 |
- |
1:00 |
pm |
Ah Chung Tsoi - e-Research: changing our lives forever? |
| 1:00 |
- |
2:00 |
pm |
Lunch |
| 2:00 |
- |
3:00 |
pm |
David Hansen - Services for e-health and life science grids |
| 3:00 |
- |
4:00 |
pm |
Tin Wee Tan - Beyond building the resourceome: WorldWide- |
| |
|
|
|
Workflow and bio-e-manufacturing |
| 4:00 |
- |
4:30 |
pm |
Afternoon tea |
|
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